Table 1 Selection of contigs showing highly enhanced read number in bHLH, WRKY, MYB, and ERF TFs after fungal elicitor treatment in annotated unigenes of the P. strobus transcriptome
Transcription factor gene name | Contig ID | FPKM value in control | FPKM value in fungal elicitor treatment | Homology to Arabidopsis gene (Function) | Identity (%) | Accession number | E-value |
|---|---|---|---|---|---|---|---|
bHLH | c161886_g1_i1 | 0.06 | 66.5 | Arabidopsis bHLH147 (Unknown function) | 27 | At3g17100 | 2e − 06 |
c126595_g1_i1 | 0.66 | 79.1 | Arabidopsis bHLH144 (Unknown function) | 59 | At1g29950 | 0.008 | |
WRKY | c48708_g1_i1 | 2.87 | 150.7 | Arabidopsis WRKY75 (Jasmonate-mediated plant defense to necrotrophic fungal pathogens) | 78 | AT5G13080 | 4e − 47 |
c63840_g1_i1 | 3.58 | 149.0 | Arabidopsis WRKY6 (Senescence- and defense-related processes) | 41 | AT1G62300 | 9e − 100 | |
MYB | c52919_g1_i1 | 0.40 | 117.7 | Arabidopsis MYB112 (Anthocyanin Formation during Stress) | 58 | AT1G48000 | 2e − 60 |
c133966_g3_i1 | 18.12 | 221.8 | Arabidopsis MYB4 (Modulation of the flavonoid biosynthetic pathway) | 58 | AT4G38620 | 2e − 74 | |
AP2/ERF | c130895_g1_i1 | 0.01 | 158.0 | Arabidopsis ORA59 (Ethylene- and jasmonic acid-induced gene) | 75 | AT1G06160 | 1e − 26 |
c134931_g1_i1 | 0.73 | 104.3 | Arabidopsis ERF2 (Reoxygenation signaling network) | 73 | AT5G47220 | 3e − 08 | |
c141277_g1_i1 | 0.20 | 58.9 | Arabidopsis ERF110 (Action for ethylene in the regulation of Arabidopsis bolting) | 76 | AT5G50080 | 6e − 28 |