Fig. 13
From: Demographic and genetic impacts of powdery mildew in a young oak (Quercus robur L.) cohort
Definition of the different a priori quality categories of SNP for genotyping, based on three criteria. The first criterion defines two “Illumina SNP class” values: 0.5 if the score obtained by using the Assay Design Tool (ADT) software is between 0.4 and 0.6, and 1 for an ADT score greater than 0.6. The second criterion is the depth of sequence alignment used to define the SNP. The third criterion is the ‘Minor Allele Frequency’ which is the frequency of the rarest allele. SNP quality categories range from 1 (best quality, in red) to 6 (worst quality, in purple)